OCA Atlas for 5W08

5W08

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, GOL, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D, A, E, C, F

Primary reference

Memory B Cells that Cross-React with Group 1 and Group 2 Influenza A Viruses Are Abundant in Adult Human Repertoires., McCarthy KR, Watanabe A, Kuraoka M, Do KT, McGee CE, Sempowski GD, Kepler TB, Schmidt AG, Kelsoe G, Harrison SC, Immunity. 2018 Jan 16;48(1):174-184.e9. doi: 10.1016/j.immuni.2017.12.009. PMID:29343437

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1433 Kb) [Save to disk]

Biological Unit Coordinates (5w08.pdb1.gz) 242 Kb

Biological Unit Coordinates (5w08.pdb2.gz) 246 Kb

Biological Unit Coordinates (5w08.pdb3.gz) 243 Kb

Biological Unit Coordinates (5w08.pdb4.gz) 245 Kb

Biological Unit Coordinates (5w08.pdb5.gz) 244 Kb

Biological Unit Coordinates (5w08.pdb6.gz) 244 Kb

LPC: Ligand-Protein Contacts for 5W08

CSU: Contacts of Structural Units for 5W08

Structure Factors (7365 Kb)

Retrieve 5W08 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5W08 from S2C, [Save to disk]

View 5W08 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5w08_A] [5w08_B] [5w08_C] [5w08_D] [5w08_E] [5w08_F] [5w08_G] [5w08_H] [5w08_I] [5w08_J] [5w08_K] [5w08_L] [5w08_M] [5w08_N] [5w08_O] [5w08_P] [5w08_Q] [5w08_R]

SWISS-PROT database:

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