5W0N Transferase date May 31, 2017
title Structure Of Human Tut7 Catalytic Module (Cm) In Complex Wit And U2 Rna
authors C.R.Faehnle, J.Walleshauser, L.Joshua-Tor
compound source
Molecule: Terminal Uridylyltransferase 7
Chain: A, B, C
Fragment: Nucleotidyltransferase Domain (Unp Residues 963-1
Synonym: Tut7, Tutase 7, Zinc Finger Cchc Domain-Containing 6;
Ec: 2.7.7.52
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zcchc6, Hs2, Kiaa1711, Tut7
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Multi-Bac, Pfl
symmetry Space Group: P 61
R_factor 0.187 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.972 135.972 181.574 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Transferase E.C.2.7.7.52 BRENDA
Primary referenceMulti-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis., Faehnle CR, Walleshauser J, Joshua-Tor L, Nat Struct Mol Biol. 2017 Aug;24(8):658-665. doi: 10.1038/nsmb.3428. Epub 2017, Jul 3. PMID:28671666
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk]
  • Biological Unit Coordinates (5w0n.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (5w0n.pdb2.gz) 194 Kb
  • Biological Unit Coordinates (5w0n.pdb3.gz) 184 Kb
  • CSU: Contacts of Structural Units for 5W0N
  • Structure Factors (1085 Kb)
  • Retrieve 5W0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W0N from S2C, [Save to disk]
  • Re-refined 5w0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5W0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W0N
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w0n from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w0n_B] [5w0n_A] [5w0n_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W0N
  • Community annotation for 5W0N at PDBWiki (http://pdbwiki.org)

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