5W0Q Transcription Regulator Inhibitor date May 31, 2017
title Crebbp Bromodomain In Complex With Cpd17 (N,2,7-Trimethyl-2, 4h-Benzo[B][1,4]Oxazine-4-Carboxamide)
authors J.M.Murray
compound source
Molecule: Creb-Binding Protein
Chain: A
Fragment: Bromodomain, Unp Residues 1082-1197
Ec: 2.3.1.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crebbp, Cbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.188 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.119 55.862 107.298 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 9UG, SO4 enzyme Transferase E.C.2.3.1.48 BRENDA
Primary referenceGNE-781, A Highly Advanced Potent and Selective Bromodomain Inhibitor of Cyclic Adenosine Monophosphate Response Element Binding Protein, Binding Protein (CBP)., Romero FA, Murray J, Lai KW, Tsui V, Albrecht BK, An L, Beresini MH, de Leon Boenig G, Bronner SM, Chan EW, Chen KX, Chen Z, Choo EF, Clagg K, Clark K, Crawford TD, Cyr P, de Almeida Nagata D, Gascoigne KE, Grogan JL, Hatzivassiliou G, Huang W, Hunsaker TL, Kaufman S, Koenig SG, Li R, Li Y, Liang X, Liao J, Liu W, Ly J, Maher J, Masui C, Merchant M, Ran Y, Taylor AM, Wai J, Wang F, Wei X, Yu D, Zhu BY, Zhu X, Magnuson S, J Med Chem. 2017 Nov 22;60(22):9162-9183. doi: 10.1021/acs.jmedchem.7b00796. Epub, 2017 Sep 21. PMID:28892380
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (5w0q.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5W0Q
  • CSU: Contacts of Structural Units for 5W0Q
  • Structure Factors (346 Kb)
  • Retrieve 5W0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W0Q from S2C, [Save to disk]
  • View 5W0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W0Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w0q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W0Q
  • Community annotation for 5W0Q at PDBWiki (http://pdbwiki.org)

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