5W0Z Hydrolase date Jun 01, 2017
title Crystal Structure Of Mbp Fused Activation-Induced Cytidine D (Aid)
authors Q.Qiao, L.Wang, H.Wu
compound source
Molecule: Mbp Fused Activation-Induced Cytidine Deaminase
Chain: B, A
Fragment: Unp P0aey0 Residues 27-392,Unp Q9gzx7 Residues 13
Ec: 3.5.4.38
Engineered: Yes
Organism_scientific: Escherichia Coli O157:H7, Homo Sapiens
Organism_common: Human
Organism_taxid: 83334, 9606
Gene: Male, Z5632, Ecs5017, Aicda, Aid
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.274 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.680 167.650 188.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.61 Å
ligand ZN enzyme Hydrolase E.C.3.5.4.38 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • carbohydrate transmembrane t...


  • Primary referenceAID Recognizes Structured DNA for Class Switch Recombination., Qiao Q, Wang L, Meng FL, Hwang JK, Alt FW, Wu H, Mol Cell. 2017 Aug 3;67(3):361-373.e4. doi: 10.1016/j.molcel.2017.06.034. Epub, 2017 Jul 27. PMID:28757211
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (176 Kb) [Save to disk]
  • Biological Unit Coordinates (5w0z.pdb1.gz) 87 Kb
  • Biological Unit Coordinates (5w0z.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 5W0Z
  • CSU: Contacts of Structural Units for 5W0Z
  • Structure Factors (388 Kb)
  • Retrieve 5W0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W0Z from S2C, [Save to disk]
  • View 5W0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W0Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w0z_A] [5w0z_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W0Z
  • Community annotation for 5W0Z at PDBWiki (http://pdbwiki.org)

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