5W17 Unknown Function date Jun 01, 2017
title Crystal Structure Of Campylobacter Jejuni Ycei Protein That Crystallizes With Large Solvent Channels For Nanotechnology Applications
authors T.R.Huber, C.D.Snow
compound source
Molecule: Putative Periplasmic Protein
Chain: A
Engineered: Yes
Organism_scientific: Campylobacter Jejuni Subsp. Jejuni Ser (Strain Atcc 700819 Nctc 11168);
Organism_taxid: 192222
Strain: Atcc 700819 Nctc 11168
Gene: Cj0420
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psb3
symmetry Space Group: P 6 2 2
R_factor 0.221 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.808 178.808 50.344 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.58 Å
ligand LFA, SO4 enzyme
Primary referenceInstalling Guest Molecules at Specific Sites within Scaffold Protein Crystals., Huber TR, McPherson EC, Keating CE, Snow CD, Bioconjug Chem. 2017 Dec 20. doi: 10.1021/acs.bioconjchem.7b00668. PMID:29232505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5w17.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 5W17
  • CSU: Contacts of Structural Units for 5W17
  • Structure Factors (435 Kb)
  • Retrieve 5W17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W17 from S2C, [Save to disk]
  • View 5W17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W17
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w17_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W17
  • Community annotation for 5W17 at PDBWiki (http://pdbwiki.org)

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