5W23 Viral Protein Immune System date Jun 05, 2017
title Crystal Structure Of Rsv F In Complex With 5c4 Fab
authors M.B.Battles, J.S.Mclellan
compound source
Molecule: Fusion Glycoprotein F0
Chain: A, B, C
Fragment: Unp Residues 1-513
Synonym: Protein F
Engineered: Yes
Organism_scientific: Human Respiratory Syncytial Virus A
Organism_taxid: 11259
Strain: A2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: 5c4 Fab Heavy Chain
Chain: H, I, J
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Strain: Balbc
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvrc8400

Molecule: 5c4 Fab Light Chain
Chain: L, M, N
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Strain: Balbc
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Expi293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvrc8400
symmetry Space Group: P 41 21 2
R_factor 0.198 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.360 183.360 275.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis of respiratory syncytial virus subtype-dependent neutralization by an antibody targeting the fusion glycoprotein., Tian D, Battles MB, Moin SM, Chen M, Modjarrad K, Kumar A, Kanekiyo M, Graepel KW, Taher NM, Hotard AL, Moore ML, Zhao M, Zheng ZZ, Xia NS, McLellan JS, Graham BS, Nat Commun. 2017 Nov 30;8(1):1877. doi: 10.1038/s41467-017-01858-w. PMID:29187732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (884 Kb) [Save to disk]
  • Biological Unit Coordinates (5w23.pdb1.gz) 870 Kb
  • LPC: Ligand-Protein Contacts for 5W23
  • CSU: Contacts of Structural Units for 5W23
  • Structure Factors (1943 Kb)
  • Retrieve 5W23 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W23 from S2C, [Save to disk]
  • View 5W23 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W23
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w23_B] [5w23_I] [5w23_H] [5w23_N] [5w23_A] [5w23_L] [5w23_J] [5w23_C] [5w23_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W23
  • Community annotation for 5W23 at PDBWiki (http://pdbwiki.org)

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