5W37 Unknown Function date Jun 07, 2017
title Crystal Structure Of Mutant Cj Ycei Protein (Cj-N182c) For Nanotechnology Applications
authors T.R.Huber, C.D.Snow
compound source
Molecule: Polyisoprenoid-Binding Protein
Chain: A
Fragment: Unp Residues 22-190
Synonym: Ycei Periplasmic Protein, Protein Ycei, Periplasmi
Engineered: Yes
Mutation: Yes
Organism_scientific: Campylobacter Jejuni
Organism_taxid: 197
Gene: A0l11_08945, A0m64_02260, A0m70_03345, Ad53_02580
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psb3
symmetry Space Group: P 6 2 2
R_factor 0.215 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.429 178.429 50.583 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.52 Å
ligand LFA, SO4 enzyme
Primary referenceInstalling Guest Molecules at Specific Sites within Scaffold Protein Crystals., Huber TR, McPherson EC, Keating CE, Snow CD, Bioconjug Chem. 2017 Dec 20. doi: 10.1021/acs.bioconjchem.7b00668. PMID:29232505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (5w37.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (5w37.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 5W37
  • CSU: Contacts of Structural Units for 5W37
  • Structure Factors (460 Kb)
  • Retrieve 5W37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W37 from S2C, [Save to disk]
  • View 5W37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W37
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w37_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W37
  • Community annotation for 5W37 at PDBWiki (http://pdbwiki.org)

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