5W3R Signaling Protein date Jun 08, 2017
title Sh2b1 Sh2 Domain
authors M.A.Mckercher, D.S.Wuttke
compound source
Molecule: Sh2b Adapter Protein 1
Chain: A
Fragment: Sh2 Domain (Unp Residues 519-628)
Synonym: Pro-Rich,Ph And Sh2 Domain-Containing Signaling Me Psm,Sh2 Domain-Containing Protein 1b;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sh2b1, Kiaa1299, Sh2b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.144 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.010 52.750 60.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.39 Å
Primary referenceDiversity in Peptide Recognition by the SH2 Domain of SH2B1., McKercher MA, Guan X, Tan Z, Wuttke DS, Proteins. 2017 Nov 11. doi: 10.1002/prot.25420. PMID:29127727
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (5w3r.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 5W3R
  • Structure Factors (199 Kb)
  • Retrieve 5W3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W3R from S2C, [Save to disk]
  • View 5W3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W3R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w3r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w3r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W3R
  • Community annotation for 5W3R at PDBWiki (http://pdbwiki.org)

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