5W3W Hydrolase date Jun 08, 2017
title Crystal Structure Of Ssopox Asd6 Mutant (V27a-Y97w-L228m-W26 Form
authors J.Hiblot, G.Gotthard, P.Jacquet, D.Daude, C.Bergonzi, E.Chabriere
compound source
Molecule: Aryldialkylphosphatase
Chain: A, B, C, D
Synonym: Paraoxonase,Ssopox,Phosphotriesterase-Like Lactona
Ec: 3.1.8.1
Engineered: Yes
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.229 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.340 105.010 153.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand CO, EDO, FE, FE2, GOL, KCX enzyme Hydrolase E.C.3.1.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • aryldialkylphosphatase activ...


  • Primary referenceRational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase., Jacquet P, Hiblot J, Daude D, Bergonzi C, Gotthard G, Armstrong N, Chabriere E, Elias M, Sci Rep. 2017 Dec 1;7(1):16745. doi: 10.1038/s41598-017-16841-0. PMID:29196634
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (5w3w.pdb1.gz) 206 Kb
  • Biological Unit Coordinates (5w3w.pdb2.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 5W3W
  • CSU: Contacts of Structural Units for 5W3W
  • Structure Factors (788 Kb)
  • Retrieve 5W3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W3W from S2C, [Save to disk]
  • View 5W3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W3W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w3w_D] [5w3w_C] [5w3w_B] [5w3w_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W3W
  • Community annotation for 5W3W at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science