5W43 Dna Binding Protein date Jun 09, 2017
title Structure Of The Two-Component Response Regulator Rcsb-Dna C
authors E.V.Filippova, Z.Warwzak, S.Pshenychnyi, W.F.Anderson, Center Fo Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Transcriptional Regulatory Protein Rcsb
Chain: A, B
Synonym: Capsular Synthesis Regulator Component B
Engineered: Yes
 Organism_scientific: Escherichia Coli Str. K-12 Substr. Mg1
Organism_taxid: 511145
Strain: K-12 Substr. Mg1655
Gene: Rcsb, B2217, Jw2205
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pca24n

Molecule: Dna (5'- D(Gpaptptptpapgpgpapapapapaptpcptptpapgp 3');
Chain: E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562

Molecule: Dna (5'- D(Tpaptpcptpapapgpaptptptptptpcpcptpapap 3');
Chain: F
Engineered: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 61
R_factor 0.183 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.691 121.691 78.863 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.15 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for DNA Recognition by the Two-Component Response Regulator RcsB., Filippova EV, Zemaitaitis B, Aung T, Wolfe AJ, Anderson WF, MBio. 2018 Feb 27;9(1). pii: mBio.01993-17. doi: 10.1128/mBio.01993-17. PMID:29487239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (5w43.pdb1.gz) 168 Kb
  • CSU: Contacts of Structural Units for 5W43
  • Structure Factors (335 Kb)
  • Retrieve 5W43 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W43 from S2C, [Save to disk]
    • View 5W43 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W43
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w43_A] [5w43_E] [5w43_B] [5w43_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W43
  • Community annotation for 5W43 at PDBWiki (http://pdbwiki.org)

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