5W4A Rna Binding Protein date Jun 09, 2017
title C. Japonica N-Domain
authors S.T.Aoki, C.A.Bingman, J.Kimble
compound source
Molecule: P-Granule Scaffold
Chain: A, B, C, D
Fragment: N-Domain (Unp Residues 1-216)
Engineered: Yes
 Organism_scientific: Caenorhabditis Japonica
Organism_taxid: 281687
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: C 1 2 1
R_factor 0.162 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.770 94.670 72.950 90.00 90.76 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand EDO, IMD, MSE, PEG, PG4, PGE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]
  • Biological Unit Coordinates (5w4a.pdb1.gz) 223 Kb
  • Biological Unit Coordinates (5w4a.pdb2.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 5W4A
  • CSU: Contacts of Structural Units for 5W4A
  • Structure Factors (4008 Kb)
  • Retrieve 5W4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W4A from S2C, [Save to disk]
    • View 5W4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W4A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w4a_D] [5w4a_C] [5w4a_A] [5w4a_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W4A
  • Community annotation for 5W4A at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science