5W5H Rna Binding Protein Rna date Jun 15, 2017
title Human Ifit1 Dimer With M7gppp-Aaaa
authors Y.M.Abbas, S.Martinez-Montero, M.J.Damha, B.Nagar
compound source
Molecule: Interferon-Induced Protein With Tetratricopeptide 1;
Chain: A, C
Synonym: Ifit-1,Interferon-Induced 56 Kda Protein,P56
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ifit1, G10p1, Ifi56, Ifnai1, Isg56
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-D((Gta))-R(Papapa)-3')
Chain: B, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
symmetry Space Group: I 4
R_factor 0.219 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.355 184.355 88.762 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.79 Å
ligand GTA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • intracellular transport of v...

    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (468 Kb) [Save to disk]
  • Biological Unit Coordinates (5w5h.pdb1.gz) 460 Kb
  • Biological Unit Coordinates (5w5h.pdb2.gz) 1832 Kb
  • LPC: Ligand-Protein Contacts for 5W5H
  • CSU: Contacts of Structural Units for 5W5H
  • Structure Factors (769 Kb)
  • Retrieve 5W5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W5H from S2C, [Save to disk]
  • Re-refined 5w5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5W5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W5H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w5h_A] [5w5h_C] [5w5h_D] [5w5h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W5H
  • Community annotation for 5W5H at PDBWiki (http://pdbwiki.org)

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