5W5L Immune System date Jun 15, 2017
title Crystal Structure Of Human Igg1-Sigma Fc Fragment
authors A.A.Armstrong, G.L.Gilliland
compound source
Molecule: Immunoglobulin Gamma-1 Heavy Chain
Chain: A, B
Fragment: Sigma Fc Fragment, Unp Residues 227-449
Synonym: Immunoglobulin Gamma-1 Heavy Chain Nie
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.360 79.170 101.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BMA, FUC, GAL, MAN, NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5w5l.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 5W5L
  • CSU: Contacts of Structural Units for 5W5L
  • Structure Factors (419 Kb)
  • Retrieve 5W5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W5L from S2C, [Save to disk]
    • View 5W5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5W5L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w5l_A] [5w5l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5W5L
  • Community annotation for 5W5L at PDBWiki (http://pdbwiki.org)

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