5W5T Transferase date Jun 15, 2017
title Agrobacterium Tumefaciens Adp-Glucose Pyrophosphorylase Boun Activator Ethyl Pyruvate
authors R.N.Mascarenhas, B.L.Hill, M.A.Ballicora, D.Liu
compound source
Molecule: Glucose-1-Phosphate Adenylyltransferase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Adp-Glucose Pyrophosphorylase,Adpglc Ppase,Adp-Glu Synthase;
Engineered: Yes
Organism_scientific: Rhizobium Radiobacter
Organism_common: Agrobacterium Tumefaciens
Organism_taxid: 358
Gene: Glgc
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 1
R_factor 0.163 R_Free 0.207
length a length b length c angle alpha angle beta angle gamma
93.781 140.145 228.855 107.81 101.84 90.06
method X-Ray Diffractionresolution 1.76 Å
ligand 9X7, GOL, SO4 enzyme Transferase E.C. BRENDA
F, T, N, K, E, Z, Q, M, C, L, A, J, O, P, B, H, D, R, I, G

Primary referenceStructural analysis reveals a pyruvate-binding activator site in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase., Hill BL, Mascarenhas R, Patel HP, Asencion Diez MD, Wu R, Iglesias AA, Liu D, Ballicora MA, J Biol Chem. 2018 Nov 6. pii: RA118.004246. doi: 10.1074/jbc.RA118.004246. PMID:30401744
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2817 Kb) [Save to disk]
  • Biological Unit Coordinates (5w5t.pdb1.gz) 560 Kb
  • Biological Unit Coordinates (5w5t.pdb2.gz) 565 Kb
  • Biological Unit Coordinates (5w5t.pdb3.gz) 556 Kb
  • Biological Unit Coordinates (5w5t.pdb4.gz) 563 Kb
  • Biological Unit Coordinates (5w5t.pdb5.gz) 552 Kb
  • LPC: Ligand-Protein Contacts for 5W5T
  • CSU: Contacts of Structural Units for 5W5T
  • Structure Factors (7489 Kb)
  • Retrieve 5W5T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W5T from S2C, [Save to disk]
  • View 5W5T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W5T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w5t_T] [5w5t_O] [5w5t_H] [5w5t_R] [5w5t_A] [5w5t_G] [5w5t_Q] [5w5t_B] [5w5t_Z] [5w5t_J] [5w5t_E] [5w5t_N] [5w5t_P] [5w5t_D] [5w5t_M] [5w5t_L] [5w5t_I] [5w5t_K] [5w5t_C] [5w5t_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W5T
  • Community annotation for 5W5T at PDBWiki (http://pdbwiki.org)

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