OCA Atlas for 5W5T

5W5T

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

9X7, GOL, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
L, F, B, O, M, G, N, K, P, E, H, Q, D, Z, R, J, A, I, C, T

Primary reference

Structural analysis reveals a pyruvate-binding activator site in the Agrobacterium tumefaciens ADP-glucose pyrophosphorylase., Hill BL, Mascarenhas R, Patel HP, Asencion Diez MD, Wu R, Iglesias AA, Liu D, Ballicora MA, J Biol Chem. 2018 Nov 6. pii: RA118.004246. doi: 10.1074/jbc.RA118.004246. PMID:30401744

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2737 Kb) [Save to disk]

Biological Unit Coordinates (5w5t.pdb1.gz) 560 Kb

Biological Unit Coordinates (5w5t.pdb2.gz) 565 Kb

Biological Unit Coordinates (5w5t.pdb3.gz) 556 Kb

Biological Unit Coordinates (5w5t.pdb4.gz) 563 Kb

Biological Unit Coordinates (5w5t.pdb5.gz) 552 Kb

LPC: Ligand-Protein Contacts for 5W5T

CSU: Contacts of Structural Units for 5W5T

Structure Factors (7489 Kb)

Retrieve 5W5T in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5W5T from S2C, [Save to disk]

View 5W5T in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5w5t_A] [5w5t_B] [5w5t_C] [5w5t_D] [5w5t_E] [5w5t_F] [5w5t_G] [5w5t_H] [5w5t_I] [5w5t_J] [5w5t_K] [5w5t_L] [5w5t_M] [5w5t_N] [5w5t_O] [5w5t_P] [5w5t_Q] [5w5t_R] [5w5t_T] [5w5t_Z]

SWISS-PROT database:

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