5W6A Immune System date Jun 16, 2017
title Hla-C06:02 Presenting Artelyrsl
authors J.I.Mobbs, J.P.Vivian, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, Cw-6 Alph
Chain: A, C
Synonym: Mhc Class I Antigen Cw6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-C, Hlac
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Beta-2-Microglobulin
Chain: B, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Ala-Arg-Thr-Glu-Leu-Tyr-Arg-Ser-Leu
Chain: E, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.161 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.191 136.950 70.961 90.00 107.06 90.00
method X-Ray Diffractionresolution 1.74 Å
Gene
Ontology
ChainFunctionProcessComponent
D, B
  • cellular response to iron io...

  • Primary referenceThe molecular basis for peptide repertoire selection in the Human Leucocyte Antigen (HLA) C*06:02 molecule., Mobbs JI, Illing PT, Dudek NL, Brooks AG, Baker DG, Purcell AW, Rossjohn J, Vivian JP, J Biol Chem. 2017 Aug 30. pii: jbc.M117.806976. doi: 10.1074/jbc.M117.806976. PMID:28855257
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (5w6a.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (5w6a.pdb2.gz) 138 Kb
  • CSU: Contacts of Structural Units for 5W6A
  • Structure Factors (3793 Kb)
  • Retrieve 5W6A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W6A from S2C, [Save to disk]
  • View 5W6A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W6A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w6a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w6a_D] [5w6a_E] [5w6a_C] [5w6a_F] [5w6a_A] [5w6a_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W6A
  • Community annotation for 5W6A at PDBWiki (http://pdbwiki.org)

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