5W7G Virus date Jun 19, 2017
title An Envelope Of A Filamentous Hyperthermophilic Virus Carries A Horseshoe Conformation
authors P.Kasson, F.Dimaio, X.Yu, S.Lucas-Staat, M.Krupovic, S.Schouten, D.Prangishvili, E.Egelman
compound source
Molecule: Orf140
Chain: A, C, E, G, I, K, M, O, Q, S, U, W, Y, a, c, e, g, I
Organism_scientific: Acidianus Filamentous Virus 1
Organism_common: Afv-1
Organism_taxid: 235266

Molecule: Orf132
Chain: B, D, F, H, J, L, N, P, R, T, V, X, Z, b, d, f, h, j

Organism_scientific: Acidianus Filamentous Virus 1
Organism_common: Afv-1
Organism_taxid: 235266

Molecule: Dna (253-Mer)
Chain: q, r

Organism_scientific: Acidianus Filamentous Virus 1
Organism_common: Afv-1
Organism_taxid: 235266
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
Primary referenceModel for a novel membrane envelope in a filamentous hyperthermophilic virus., Kasson P, DiMaio F, Yu X, Lucas-Staat S, Krupovic M, Schouten S, Prangishvili D, Egelman EH, Elife. 2017 Jun 22;6. pii: e26268. doi: 10.7554/eLife.26268. PMID:28639939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (890 Kb) [Save to disk]
  • Biological Unit Coordinates (5w7g.pdb1.gz) 885 Kb
  • CSU: Contacts of Structural Units for 5W7G
  • Retrieve 5W7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W7G from S2C, [Save to disk]
  • View 5W7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W7G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w7g_d] [5w7g_b] [5w7g_p] [5w7g_E] [5w7g_P] [5w7g_q] [5w7g_S] [5w7g_e] [5w7g_A] [5w7g_U] [5w7g_r] [5w7g_g] [5w7g_o] [5w7g_n] [5w7g_H] [5w7g_f] [5w7g_K] [5w7g_C] [5w7g_V] [5w7g_J] [5w7g_i] [5w7g_c] [5w7g_k] [5w7g_G] [5w7g_O] [5w7g_a] [5w7g_Y] [5w7g_M] [5w7g_Z] [5w7g_h] [5w7g_D] [5w7g_I] [5w7g_Q] [5w7g_m] [5w7g_X] [5w7g_j] [5w7g_N] [5w7g_F] [5w7g_R] [5w7g_l] [5w7g_T] [5w7g_W] [5w7g_L] [5w7g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W7G
  • Community annotation for 5W7G at PDBWiki (http://pdbwiki.org)

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