5W7J Protein Binding date Jun 20, 2017
title X-Ray Structure Of The E89a Variant Of Ankyrin Repeat Domain In Complex With Snap25b Peptide
authors R.Verardi, J.S.Kim, R.Ghirlando, A.Banerjee
compound source
Molecule: Palmitoyltransferase Zdhhc17
Chain: A, C
Synonym: Huntingtin Yeast Partner H,Huntingtin-Interacting 14,Hip-14,Huntingtin-Interacting Protein 3,Hip-3,Huntingtin Interacting Protein H,Putative Mapk-Activating Protein Pm11 Nf-Kappa-B-Activating Protein 205,Zinc Finger Dhhc Domain-C Protein 17,Dhhc-17;
Ec: 2.3.1.225
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zdhhc17, Hip14, Hip3, Hyph, Kiaa0946, Hspc294
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Snap25b-111-120
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 64
R_factor 0.170 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.736 87.736 128.007 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.3.1.225 BRENDA
Primary referenceStructural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase., Verardi R, Kim JS, Ghirlando R, Banerjee A, Structure. 2017 Jul 18. pii: S0969-2126(17)30214-9. doi:, 10.1016/j.str.2017.06.018. PMID:28757145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (5w7j.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (5w7j.pdb2.gz) 39 Kb
  • CSU: Contacts of Structural Units for 5W7J
  • Structure Factors (711 Kb)
  • Retrieve 5W7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W7J from S2C, [Save to disk]
  • View 5W7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W7J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w7j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w7j_A] [5w7j_C] [5w7j_D] [5w7j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W7J
  • Community annotation for 5W7J at PDBWiki (http://pdbwiki.org)

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