5W97 Oxidoreductase date Jun 22, 2017
title Crystal Structure Of Co-Bound Cytochrome C Oxidase Determine Serial Femtosecond X-Ray Crystallography At Room Temperatur
authors D.L.Rousseau, S.R.Yeh, I.Ishigami, N.A.Zatsepin, T.D.Grant, P.Fr R.Fromme
compound source
Molecule: Cytochrome C Oxidase Subunit 1
Chain: A, a
Synonym: Cytochrome C Oxidase Polypeptide I
Ec: 1.9.3.1
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 2
Chain: B, b
Synonym: Cytochrome C Oxidase Polypeptide II

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 3
Chain: C, c
Synonym: Cytochrome C Oxidase Polypeptide III

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 4 Isoform 1, Mitocho
Chain: D, d
Fragment: Residues 23-169
Synonym: Cytochrome C Oxidase Polypeptide Iv,Cytochrome C O Subunit Iv Isoform 1,Cox Iv-1;

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 5a, Mitochondrial
Chain: E, e
Fragment: Residues 44-152
Synonym: Cytochrome C Oxidase Polypeptide Va

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 5b, Mitochondrial
Chain: F, f
Fragment: Residues 32-129
Synonym: Cytochrome C Oxidase Polypeptide Via,Cytochrome C Polypeptide Vb;

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 6a2, Mitochondrial
Chain: G, g
Fragment: Residues 13-97
Synonym: Cytochrome C Oxidase Polypeptide Via-Heart,Coxviah Cytochrome C Oxidase Polypeptide Vib;

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 6b1
Chain: H, h
Synonym: Cytochrome C Oxidase Polypeptide Vii,Cytochrome C Subunit Aed,Cytochrome C Oxidase Subunit Vib Isoform 1,Cox

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 6c
Chain: I, I
Synonym: Cytochrome C Oxidase Polypeptide Vic,Cytochrome C Subunit Sta;

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 7a1, Mitochondrial
Chain: J, j
Fragment: Residues 22-80
Synonym: Cytochrome C Oxidase Subunit Viiic,Viiic,Cytochrom Oxidase Subunit Viia-Heart,Cytochrome C Oxidase Subunit Vii Cytochrome C Oxidase Subunit Viia-Muscle,Cytochrome C Oxida Viia-M;

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 7b, Mitochondrial
Chain: K, k
Fragment: Residues 25-80
Synonym: Cytochrome C Oxidase Polypeptide Viib,Ihq

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 7c, Mitochondrial
Chain: L, l
Fragment: Residues 17-63
Synonym: Cytochrome C Oxidase Polypeptide Viiia,Cytochrome Polypeptide Viic;

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Cytochrome C Oxidase Subunit 8b, Mitochondrial
Chain: M, m
Fragment: Residues 25-70
Synonym: Cytochrome C Oxidase Polypeptide Viii-Heart,Cytoch Oxidase Subunit 8-1,Cytochrome C Oxidase Subunit 8h,Ix,Viii

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.300 189.000 209.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CDL, CHD, CMO, CU, CUA, DMU, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, ZN enzyme Oxidoreductase E.C.1.9.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, b
  • cytochrome-c oxidase activit...


  • C, c
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


  • E, e


    F, f


    K, k


    L, l


    M, m


    a, A


    d, D


    g, G


    h, H


    i, I
  • cytochrome-c oxidase activit...


  • j, J


    Primary referenceCrystal structure of CO-bound cytochrome c oxidase determined by serial femtosecond X-ray crystallography at room temperature., Ishigami I, Zatsepin NA, Hikita M, Conrad CE, Nelson G, Coe JD, Basu S, Grant TD, Seaberg MH, Sierra RG, Hunter MS, Fromme P, Fromme R, Yeh SR, Rousseau DL, Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):8011-8016. doi:, 10.1073/pnas.1705628114. Epub 2017 Jul 11. PMID:28698372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (674 Kb) [Save to disk]
  • Biological Unit Coordinates (5w97.pdb1.gz) 648 Kb
  • LPC: Ligand-Protein Contacts for 5W97
  • CSU: Contacts of Structural Units for 5W97
  • Structure Factors (9491 Kb)
  • Retrieve 5W97 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W97 from S2C, [Save to disk]
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  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w97 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w97_K] [5w97_A] [5w97_d] [5w97_h] [5w97_G] [5w97_M] [5w97_a] [5w97_C] [5w97_f] [5w97_I] [5w97_B] [5w97_i] [5w97_D] [5w97_j] [5w97_e] [5w97_L] [5w97_J] [5w97_k] [5w97_g] [5w97_H] [5w97_m] [5w97_c] [5w97_E] [5w97_F] [5w97_b] [5w97_l]
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  • Domain organization of by SWISSPFAM
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  • Community annotation for 5W97 at PDBWiki (http://pdbwiki.org)

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