5W9S Dna Binding Protein Dna date Jun 23, 2017
title Zinc Finger Of Human Cxxc5 In Complex With Cpg Dna
authors K.Liu, C.Xu, W.Tempel, J.R.Walker, C.Bountra, C.H.Arrowsmith, A.M. J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Cpg Dna Fragment
Chain: A, B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthetic

Molecule: Cxxc-Type Zinc Finger Protein 5
Chain: C
Fragment: Zinc Finger Domain (Unp Residues 254-306)
Synonym: Cf5,Putative Mapk-Activating Protein Pm08,Putative B-Activating Protein 102,Retinoid-Inducible Nuclear Factor,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cxxc5, Hspc195, Tcccia00297
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 32
R_factor 0.219 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.110 40.110 81.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand SO4, UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceDNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants., Xu C, Liu K, Lei M, Yang A, Li Y, Hughes TR, Min J, Structure. 2017 Dec 16. pii: S0969-2126(17)30396-9. doi:, 10.1016/j.str.2017.11.022. PMID:29276034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5w9s.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 5W9S
  • CSU: Contacts of Structural Units for 5W9S
  • Structure Factors (1653 Kb)
  • Retrieve 5W9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W9S from S2C, [Save to disk]
  • View 5W9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w9s_B] [5w9s_A] [5w9s_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W9S
  • Community annotation for 5W9S at PDBWiki (http://pdbwiki.org)

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