5WCU Chromatin Binding Protein Dna date Jul 02, 2017
title Crystal Structure Of 167 Bp Nucleosome Bound To The Globular Linker Histone H5
authors J.S.Jiang, B.R.Zhou
compound source
Molecule: Histone H3
Chain: A, E, K, O
Fragment: Unp Residues 39-136
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: His3, His3:Cg31613, Cg31613, His3:Cg33803, Cg33803,
His3: Cg33806, Cg33806, His3:Cg33809, Cg33809, His3:Cg33812,
His3: Cg33815, Cg33815, His3:Cg33818, Cg33818, His3:Cg33821,
His3: Cg33824, Cg33824, His3:Cg33827, Cg33827, His3:Cg33830,
His3: Cg33833, Cg33833, His3:Cg33836, Cg33836, His3:Cg33839,
His3: Cg33842, Cg33842, His3:Cg33845, Cg33845, His3:Cg33848,
His3: Cg33851, Cg33851, His3:Cg33854, Cg33854, His3:Cg33857,
His3: Cg33860, Cg33860, His3:Cg33863, Cg33863, His3:Cg33866,
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H4
Chain: B, F, L, P
Fragment: Unp Residues 22-103
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: His4, H4, His4r, H4r, Cg3379, His4:Cg31611, Cg31611,
His4: Cg33869, Cg33869, His4:Cg33871, Cg33871, His4:Cg33873,
His4: Cg33875, Cg33875, His4:Cg33877, Cg33877, His4:Cg33879,
His4: Cg33881, Cg33881, His4:Cg33883, Cg33883, His4:Cg33885,
His4: Cg33887, Cg33887, His4:Cg33889, Cg33889, His4:Cg33891,
His4: Cg33893, Cg33893, His4:Cg33895, Cg33895, His4:Cg33897,
His4: Cg33899, Cg33899, His4:Cg33901, Cg33901, His4:Cg33903,
His4: Cg33905, Cg33905, His4:Cg33907, Cg33907, His4:Cg33909,
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2a
Chain: C, G, M, Q
Fragment: Unp Residues 15-118
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: His2a, H2a, His2a:Cg31618, Cg31618, His2a:Cg33808, Cg
His2a: Cg33814, Cg33814, His2a:Cg33817, Cg33817, His2a:Cg338
Cg33820, His2a: Cg33823, Cg33823, His2a:Cg33826, Cg33826,
His2a: Cg33829, Cg33829, His2a:Cg33832, Cg33832, His2a:Cg338
Cg33835, His2a: Cg33838, Cg33838, His2a:Cg33841, Cg33841,
His2a: Cg33844, Cg33844, His2a:Cg33847, Cg33847, His2a:Cg338
Cg33850, His2a: Cg33862, Cg33862, His2a:Cg33865, Cg33865
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: D, H, N, R
Fragment: Unp Residues 29-122
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: His2b, His2b:Cg17949, Cg17949, His2b:Cg33868, Cg33868
His2b: Cg33870, Cg33870, His2b:Cg33872, Cg33872, His2b:Cg338
Cg33874, His2b: Cg33876, Cg33876, His2b:Cg33878, Cg33878,
His2b: Cg33880, Cg33880, His2b:Cg33882, Cg33882, His2b:Cg338
Cg33884, His2b: Cg33886, Cg33886, His2b:Cg33888, Cg33888,
His2b: Cg33890, Cg33890, His2b:Cg33892, Cg33892, His2b:Cg338
Cg33894, His2b: Cg33896, Cg33896, His2b:Cg33898, Cg33898,
His2b: Cg33900, Cg33900, His2b:Cg33902, Cg33902, His2b:Cg339
Cg33904, His2b: Cg33906, Cg33906, His2b:Cg33908, Cg33908,
His2b: Cg33910, Cg33910
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (167-Mer)
Chain: I, S
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: 167 Bp Widom 601 Dna

Molecule: Dna (167-Mer)
Chain: J, T
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: 167 Bp Widom 601 Dna

Molecule: Histone H5
Chain: U, V
Fragment: Unp Residues 23-98
Engineered: Yes

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.189 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.926 108.543 180.770 100.79 90.08 89.94
method X-Ray Diffractionresolution 5.53 Å
Gene
Ontology
ChainFunctionProcessComponent
A, O, K, E


F, P, B, L


N, H, D, R


Q, M, C, G


V, U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (5wcu.pdb1.gz) 269 Kb
  • Biological Unit Coordinates (5wcu.pdb2.gz) 270 Kb
  • CSU: Contacts of Structural Units for 5WCU
  • Structure Factors (331 Kb)
  • Retrieve 5WCU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WCU from S2C, [Save to disk]
  • View 5WCU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WCU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wcu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wcu_O] [5wcu_R] [5wcu_D] [5wcu_P] [5wcu_N] [5wcu_V] [5wcu_U] [5wcu_J] [5wcu_F] [5wcu_L] [5wcu_Q] [5wcu_A] [5wcu_B] [5wcu_E] [5wcu_T] [5wcu_H] [5wcu_C] [5wcu_K] [5wcu_S] [5wcu_G] [5wcu_M] [5wcu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WCU
  • Community annotation for 5WCU at PDBWiki (http://pdbwiki.org)

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