5WHB	Protein Binding	date	Jul 16, 2017
title	Kras G12v, Bound To Gdp And Miniprotein 225-11(A30r)
authors	S.Y.Shim, J.H.Mcgee, S.J.Lee, G.L.Verdine
compound		source
Molecule: Gtpase Kras Chain: A, D, G, J Fragment: Unp Residues 1-166 Synonym: K-Ras 2,Ki-Ras,C-K-Ras,C-Ki-Ras Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kras, Kras2, Rask2 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ras Binder Peptide: 225-11 (A30r) Chain: B, C, E, F, H, I, K, L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.002 232.043 47.924 90.00 90.10 90.00
method	X-Ray Diffraction	resolution	2.18 Å
ligand	CA, GDP, MG	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G F, K, E, B, H, C, I, L
Primary reference	Exceptionally high-affinity Ras binders that remodel its effector domain., McGee JH, Shim SY, Lee SJ, Swanson PK, Jiang Y, Durney MA, Verdine GL, J Biol Chem. 2017 Dec 27. pii: M117.816348. doi: 10.1074/jbc.M117.816348. PMID:29282294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk] Biological Unit Coordinates (5whb.pdb1.gz) 80 Kb Biological Unit Coordinates (5whb.pdb2.gz) 79 Kb Biological Unit Coordinates (5whb.pdb3.gz) 77 Kb Biological Unit Coordinates (5whb.pdb4.gz) 78 Kb Biological Unit Coordinates (5whb.pdb5.gz) 155 Kb Biological Unit Coordinates (5whb.pdb6.gz) 153 Kb LPC: Ligand-Protein Contacts for 5WHB CSU: Contacts of Structural Units for 5WHB Structure Factors (1766 Kb) Retrieve 5WHB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WHB from S2C, [Save to disk]

View 5WHB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WHB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5whb_G] [5whb_D] [5whb_I] [5whb_E] [5whb_L] [5whb_B] [5whb_A] [5whb_F] [5whb_K] [5whb_C] [5whb_J] [5whb_H] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WHB

Community annotation for 5WHB at PDBWiki (http://pdbwiki.org)

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