5WIV Signaling Protein Antagonist date Jul 20, 2017
title Structure Of The Sodium-Bound Human D4 Dopamine Receptor In With Nemonapride
authors D.Wacker, S.Wang, A.Levit, T.Che, R.M.Betz, J.D.Mccorvy, A.J.Venkatakrishnan, X.P.Huang, R.O.Dror, B.K.Shoichet, B.L.Ro
compound source
Molecule: D(4) Dopamine Receptor, Soluble Cytochrome B562 C
Chain: A
Synonym: D(2c) Dopamine Receptor, Dopamine D4 Receptor, Cyt 562;
Engineered: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Drd4, Cybc
Expression_system: Insecta
Expression_system_taxid: 50557
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1-Hm
symmetry Space Group: C 2 2 21
R_factor 0.195 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.861 162.836 83.181 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceD4 dopamine receptor high-resolution structures enable the discovery of selective agonists., Wang S, Wacker D, Levit A, Che T, Betz RM, McCorvy JD, Venkatakrishnan AJ, Huang XP, Dror RO, Shoichet BK, Roth BL, Science. 2017 Oct 20;358(6361):381-386. doi: 10.1126/science.aan5468. PMID:29051383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (5wiv.pdb1.gz) 125 Kb
  • CSU: Contacts of Structural Units for 5WIV
  • Structure Factors (642 Kb)
  • Retrieve 5WIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WIV from S2C, [Save to disk]
  • View 5WIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WIV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wiv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wiv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WIV
  • Community annotation for 5WIV at PDBWiki (http://pdbwiki.org)

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