5WJ9 Membrane Protein date Jul 21, 2017
title Human Trpml1 Channel Structure In Agonist-Bound Open Conform
authors P.Schmiege, X.Li
compound source
Molecule: Mucolipin-1
Chain: A, B, C, D
Synonym: Mg-2,Mucolipidin
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcoln1, Ml4, Mstp080
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek-293s
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.49 Å
ligand AQV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • iron ion transmembrane trans...
  • ligand-gated calcium channel...


    • Primary referenceHuman TRPML1 channel structures in open and closed conformations., Schmiege P, Fine M, Blobel G, Li X, Nature. 2017 Oct 19;550(7676):366-370. doi: 10.1038/nature24036. Epub 2017 Oct, 11. PMID:29019983
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (5wj9.pdb1.gz) 317 Kb
  • LPC: Ligand-Protein Contacts for 5WJ9
  • CSU: Contacts of Structural Units for 5WJ9
  • Retrieve 5WJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WJ9 from S2C, [Save to disk]
    • View 5WJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WJ9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wj9_D] [5wj9_C] [5wj9_B] [5wj9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WJ9
  • Community annotation for 5WJ9 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science