5WLW Transferase date Jul 27, 2017
title Crystal Structure Of The Human Mitochondrial Cysteine Desulf Active Cysteine Loop Within Iscu1 Active Site, Coordinating Complexed With Human Isd11 And E. Coli Acp1 At 3.3a.
authors M.T.Boniecki, M.Cygler
compound source
Molecule: Cysteine Desulfurase, Mitochondrial
Chain: A, E
Fragment: Unp Residues 56-457
Ec: 2.8.1.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfs1, Nifs, Hussy-08
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lyr Motif-Containing Protein 4
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lyrm4, C6orf149, Isd11, Cgi-203
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Acyl Carrier Protein
Chain: C, G
Synonym: Acp
Engineered: Yes

Organism_scientific: Escherichia Coli O45:K1 (Strain S88
Organism_taxid: 585035
Strain: S88 Expec
Gene: Acpp, Ecs88_1108
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Iron-Sulfur Cluster Assembly Enzyme Iscu, Mitocho
Chain: D, H
Synonym: Nifu-Like N-Terminal Domain-Containing Protein,Nif Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Iscu, Nifun
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.529 121.241 151.484 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.32 Å
ligand 8Q1, PLP, ZN enzyme Transferase E.C.2.8.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceStructure and functional dynamics of the mitochondrial Fe/S cluster synthesis complex., Boniecki MT, Freibert SA, Muhlenhoff U, Lill R, Cygler M, Nat Commun. 2017 Nov 3;8(1):1287. doi: 10.1038/s41467-017-01497-1. PMID:29097656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (418 Kb) [Save to disk]
  • Biological Unit Coordinates (5wlw.pdb1.gz) 408 Kb
  • LPC: Ligand-Protein Contacts for 5WLW
  • CSU: Contacts of Structural Units for 5WLW
  • Structure Factors (747 Kb)
  • Retrieve 5WLW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WLW from S2C, [Save to disk]
  • View 5WLW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WLW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wlw_G] [5wlw_H] [5wlw_B] [5wlw_D] [5wlw_E] [5wlw_A] [5wlw_F] [5wlw_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WLW
  • Community annotation for 5WLW at PDBWiki (http://pdbwiki.org)

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