5WMB	Transferase Dna	date	Jul 28, 2017
title	Structure Of The 10s (-)-Cis-Bp-Dg Modified Rev1 Ternary Com Bp Residue Is Disordered)
authors	O.Rechkoblit, A.Kolbanovsky, H.Landes, N.E.Geacintov, A.K.Aggarw
compound		source
Molecule: Dna (5'-D(Gpgpgpgptpgptpgpgptpap(Ddg) Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Paptpcpgpcptpapcpcpapcpapc 3'); Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Repair Protein Rev1 Chain: A Synonym: Reversionless Protein 1 Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rev1, Yor346w, O6339 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus
symmetry	Space Group: P 21 21 21	R_factor 0.170 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.307 65.476 131.657 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	DCP, DDG, EDO, GOL, MG, PEG	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Mechanism of error-free replication across benzo[a]pyrene stereoisomers by Rev1 DNA polymerase., Rechkoblit O, Kolbanovskiy A, Landes H, Geacintov NE, Aggarwal AK, Nat Commun. 2017 Oct 17;8(1):965. doi: 10.1038/s41467-017-01013-5. PMID:29042535

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (5wmb.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 5WMB CSU: Contacts of Structural Units for 5WMB Structure Factors (759 Kb) Retrieve 5WMB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WMB from S2C, [Save to disk]

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Visual 3D analysis of 5WMB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wmb_T] [5wmb_A] [5wmb_P] SWISS-PROT database: Domain organization of by SWISSPFAM

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