5WN8 Oxidoreductase date Jul 31, 2017
title Structural Insights Into Substrate And Inhibitor Binding Sit Human Indoleamine 2,3-Dioxygenase 1
authors A.Lewis-Ballester, K.N.Pham, D.Batabyal, S.Karkashon, J.B.Bonann T.L.Poulos, S.R.Yeh
compound source
Molecule: Indoleamine 2,3-Dioxygenase 1
Chain: A, B
Synonym: Ido-1,Indoleamine-Pyrrole 2,3-Dioxygenase
Ec: 1.13.11.52
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ido1, Ido, Indo
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.735 97.785 128.739 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BBJ, HEM enzyme Oxidoreductase E.C.1.13.11.52 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceStructural insights into substrate and inhibitor binding sites in human indoleamine 2,3-dioxygenase 1., Lewis-Ballester A, Pham KN, Batabyal D, Karkashon S, Bonanno JB, Poulos TL, Yeh SR, Nat Commun. 2017 Nov 22;8(1):1693. doi: 10.1038/s41467-017-01725-8. PMID:29167421
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (5wn8.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (5wn8.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5WN8
  • CSU: Contacts of Structural Units for 5WN8
  • Structure Factors (1107 Kb)
  • Retrieve 5WN8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WN8 from S2C, [Save to disk]
    • View 5WN8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WN8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wn8_A] [5wn8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WN8
  • Community annotation for 5WN8 at PDBWiki (http://pdbwiki.org)

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