5WNX DNA polymerase beta substrate complex with incoming 6-TdGTP date
authors Schaich, M.A., Smith, M.R., Cloud, A.S., Holloran, S.M., Freudenthal, B.D.
compound source
symmetry
R_factor
R_Free 0.2895
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand CA, CL, NA, SGT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of a DNA Polymerase Inserting Therapeutic Nucleotide Analogues., Schaich MA, Smith MR, Cloud AS, Holloran SM, Freudenthal BD, Chem Res Toxicol. 2017 Sep 1. doi: 10.1021/acs.chemrestox.7b00173. PMID:28862449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5wnx.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 5WNX
  • CSU: Contacts of Structural Units for 5WNX
  • Structure Factors (147 Kb)
  • Retrieve 5WNX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WNX from S2C, [Save to disk]
  • View 5WNX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WNX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wnx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wnx_P] [5wnx_A] [5wnx_D] [5wnx_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WNX
  • Community annotation for 5WNX at PDBWiki (http://pdbwiki.org)

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