5WPL	Signaling Protein	date	Aug 05, 2017
title	Kras G12v, Bound To Gppnhp And Miniprotein 225-11
authors	S.J.Lee, S.Y.Shim, J.H.Mcgee, G.L.Verdine
compound		source
Molecule: Gtpase Hras Chain: A, D, G, J Fragment: Residues 1-166 Synonym: H-Ras-1,Ha-Ras,Transforming Protein P21,C-H-Ras,P2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hras, Hras1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ras-Binding Peptide Chain: B, C, E, F, H, I, K, L Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932
symmetry	Space Group: P 1 21 1	R_factor 0.205 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.861 234.507 48.143 90.00 90.13 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	CA, GNP, MG	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G F, K, E, B, H, C, I, L
Primary reference	Exceptionally high-affinity Ras binders that remodel its effector domain., McGee JH, Shim SY, Lee SJ, Swanson PK, Jiang Y, Durney MA, Verdine GL, J Biol Chem. 2017 Dec 27. pii: M117.816348. doi: 10.1074/jbc.M117.816348. PMID:29282294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk] Biological Unit Coordinates (5wpl.pdb1.gz) 42 Kb Biological Unit Coordinates (5wpl.pdb2.gz) 40 Kb Biological Unit Coordinates (5wpl.pdb3.gz) 40 Kb Biological Unit Coordinates (5wpl.pdb4.gz) 41 Kb LPC: Ligand-Protein Contacts for 5WPL CSU: Contacts of Structural Units for 5WPL Structure Factors (1424 Kb) Retrieve 5WPL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WPL from S2C, [Save to disk]

View 5WPL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WPL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wpl_J] [5wpl_D] [5wpl_I] [5wpl_C] [5wpl_E] [5wpl_B] [5wpl_K] [5wpl_A] [5wpl_G] [5wpl_L] [5wpl_F] [5wpl_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5WPL at PDBWiki (http://pdbwiki.org)

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