5WRN Transferase date Dec 02, 2016
title Human Thymidylate Synthase Complexed With Dcmp
authors D.Chen, P.Nordlund
compound source
Molecule: Thymidylate Synthase
Chain: B, A, C, D, E, F
Fragment: Unp Residues 26-313
Synonym: Tsase
Ec: 2.1.1.45
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyms, Ts, Oksw-Cl.29
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.188 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.096 110.096 317.268 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.39 Å
ligand DC enzyme Transferase E.C.2.1.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • thymidylate synthase activit...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (5wrn.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (5wrn.pdb2.gz) 96 Kb
  • Biological Unit Coordinates (5wrn.pdb3.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 5WRN
  • CSU: Contacts of Structural Units for 5WRN
  • Structure Factors (1896 Kb)
  • Retrieve 5WRN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WRN from S2C, [Save to disk]
  • Re-refined 5wrn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5WRN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WRN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wrn_F] [5wrn_D] [5wrn_C] [5wrn_A] [5wrn_E] [5wrn] [5wrn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WRN
  • Community annotation for 5WRN at PDBWiki (http://pdbwiki.org)

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