5WUK Gene Regulation date Dec 19, 2016
title Crystal Structure Of Eed [G255d] In Complex With Ezh2 Peptid Eed226 Compound
authors Z.Chen
compound source
Molecule: Polycomb Protein Eed
Chain: A
Fragment: Unp Residues 76-441
Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone-Lysine N-Methyltransferase Ezh2
Chain: B
Fragment: Unp Residues 41-68
Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6;
Ec: 2.1.1.43
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.160 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.100 80.280 108.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand 73K, GOL enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceSplit luciferase-based biosensors for characterizing EED binders., Li L, Feng L, Shi M, Zeng J, Chen Z, Zhong L, Huang L, Guo W, Huang Y, Qi W, Lu C, Li E, Zhao K, Gu J, Anal Biochem. 2017 Apr 1;522:37-45. doi: 10.1016/j.ab.2017.01.014. Epub 2017 Jan , 19. PMID:28111304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5wuk.pdb1.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 5WUK
  • CSU: Contacts of Structural Units for 5WUK
  • Structure Factors (1046 Kb)
  • Retrieve 5WUK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WUK from S2C, [Save to disk]
  • Re-refined 5wuk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5WUK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WUK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wuk] [5wuk_A] [5wuk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WUK
  • Community annotation for 5WUK at PDBWiki (http://pdbwiki.org)

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