5WWT Transferase Rna date Jan 04, 2017
title Crystal Structure Of Human Nsun6trna
authors R.J.Liu, T.Long, E.D.Wang
compound source
Molecule: Putative Methyltransferase Nsun6
Chain: A, B
Synonym: Nol1nop2sun And Pua Domain-Containing Protein 1, Nol1nop2sun Domain Family Member 6;
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsun6, Nopd1
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032

Molecule: Trna
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
205.586 170.117 76.909 90.00 108.19 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand
enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for substrate binding and catalytic mechanism of a human RNA:m5C methyltransferase NSun6., Liu RJ, Long T, Li J, Li H, Wang ED, Nucleic Acids Res. 2017 May 22. doi: 10.1093/nar/gkx473. PMID:28531330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (5wwt.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (5wwt.pdb2.gz) 103 Kb
  • CSU: Contacts of Structural Units for 5WWT
  • Structure Factors (1347 Kb)
  • Retrieve 5WWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WWT from S2C, [Save to disk]
  • Re-refined 5wwt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5WWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WWT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wwt_B] [5wwt_A] [5wwt_C] [5wwt_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WWT
  • Community annotation for 5WWT at PDBWiki (http://pdbwiki.org)

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