5WZ4 Crystal structure of Mycobacterium tuberculosis VapC20 (Rv2549c), Sarcin-Ricin loop cleaving toxin date
authors Thakur, K.G., Deep, A.
compound source
symmetry
R_factor
R_Free 0.2120
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.77
ligand CSO, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity
  • ribonuclease activity


    • Primary referenceCrystal structure of Mycobacterium tuberculosis VapC20 toxin and its interactions with cognate antitoxin, VapB20, suggest a model for toxin-antitoxin assembly., Deep A, Kaundal S, Agarwal S, Singh R, Thakur KG, FEBS J. 2017 Oct 7. doi: 10.1111/febs.14289. PMID:28986943
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (5wz4.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 5WZ4
  • CSU: Contacts of Structural Units for 5WZ4
  • Structure Factors (451 Kb)
  • Retrieve 5WZ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WZ4 from S2C, [Save to disk]
    • View 5WZ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WZ4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wz4_B] [5wz4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WZ4
  • Community annotation for 5WZ4 at PDBWiki (http://pdbwiki.org)

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