5X1A Protein Binding date Jan 25, 2017
title Crystal Structure Of Human Crmp-2
authors R.Nitta, Y.Tomabechi, M.Aoki, M.Shirouzu
compound source
Molecule: Dihydropyrimidinase-Related Protein 2
Chain: A
Fragment: Unp Residues 1-525
Synonym: Drp-2,Collapsin Response Mediator Protein 2,Crmp-2 33-Like Phosphoprotein 2,Ulip-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpysl2, Crmp2, Ulip2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: I 41 2 2
R_factor 0.187 R_Free 0.214
length a length b length c angle alpha angle beta angle gamma
114.121 114.121 196.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å

Primary referenceStructural basis for CRMP2-induced axonal microtubule formation., Niwa S, Nakamura F, Tomabechi Y, Aoki M, Shigematsu H, Matsumoto T, Yamagata A, Fukai S, Hirokawa N, Goshima Y, Shirouzu M, Nitta R, Sci Rep. 2017 Sep 6;7(1):10681. doi: 10.1038/s41598-017-11031-4. PMID:28878401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (5x1a.pdb1.gz) 336 Kb
  • CSU: Contacts of Structural Units for 5X1A
  • Structure Factors (1283 Kb)
  • Retrieve 5X1A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X1A from S2C, [Save to disk]
  • View 5X1A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X1A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5x1a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x1a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X1A
  • Community annotation for 5X1A at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science