5X1C Protein Binding date Jan 25, 2017
title Crystal Structure Of Human Crmp-2 Without C-Terminal Tail
authors R.Nitta, Y.Tomabechi, M.Aoki, M.Shirouzu
compound source
Molecule: Dihydropyrimidinase-Related Protein 2
Chain: A, B
Fragment: Unp Residues 13-490
Synonym: Drp-2,Collapsin Response Mediator Protein 2,Crmp-2 33-Like Phosphoprotein 2,Ulip-2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpysl2, Crmp2, Ulip2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 42 21 2
R_factor 0.177 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.687 126.687 148.219 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for CRMP2-induced axonal microtubule formation., Niwa S, Nakamura F, Tomabechi Y, Aoki M, Shigematsu H, Matsumoto T, Yamagata A, Fukai S, Hirokawa N, Goshima Y, Shirouzu M, Nitta R, Sci Rep. 2017 Sep 6;7(1):10681. doi: 10.1038/s41598-017-11031-4. PMID:28878401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (5x1c.pdb1.gz) 315 Kb
  • CSU: Contacts of Structural Units for 5X1C
  • Structure Factors (1692 Kb)
  • Retrieve 5X1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X1C from S2C, [Save to disk]
  • View 5X1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X1C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x1c_A] [5x1c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X1C
  • Community annotation for 5X1C at PDBWiki (http://pdbwiki.org)

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