5X1D Protein Binding date Jan 25, 2017
title Crystal Structure Of T246a-N247a Human Crmp-2 Mutant
authors R.Nitta, Y.Tomabechi, M.Aoki, M.Shirouzu
compound source
Molecule: Dihydropyrimidinase-Related Protein 2
Chain: A
Fragment: Unp Residues 1-525
Synonym: Drp-2,Collapsin Response Mediator Protein 2,Crmp-2 33-Like Phosphoprotein 2,Ulip-2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dpysl2, Crmp2, Ulip2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: I 41 2 2
R_factor 0.159 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.231 114.231 193.568 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for CRMP2-induced axonal microtubule formation., Niwa S, Nakamura F, Tomabechi Y, Aoki M, Shigematsu H, Matsumoto T, Yamagata A, Fukai S, Hirokawa N, Goshima Y, Shirouzu M, Nitta R, Sci Rep. 2017 Sep 6;7(1):10681. doi: 10.1038/s41598-017-11031-4. PMID:28878401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5x1d.pdb1.gz) 324 Kb
  • CSU: Contacts of Structural Units for 5X1D
  • Structure Factors (642 Kb)
  • Retrieve 5X1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X1D from S2C, [Save to disk]
  • View 5X1D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X1D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x1d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X1D
  • Community annotation for 5X1D at PDBWiki (http://pdbwiki.org)

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