5X1F date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CMO, CU, CUA, DMU, EDO, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, O
  • cytochrome-c oxidase activit...


    • D, Q


    E, R


    F, S


    I, V
  • cytochrome-c oxidase activit...


    • K, X


    M, Z


    N, A


    P, C
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • T, G


    U, H


    W, J


    Y, L


    Primary referenceA nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase., Shimada A, Kubo M, Baba S, Yamashita K, Hirata K, Ueno G, Nomura T, Kimura T, Shinzawa-Itoh K, Baba J, Hatano K, Eto Y, Miyamoto A, Murakami H, Kumasaka T, Owada S, Tono K, Yabashi M, Yamaguchi Y, Yanagisawa S, Sakaguchi M, Ogura T, Komiya R, Yan J, Yamashita E, Yamamoto M, Ago H, Yoshikawa S, Tsukihara T, Sci Adv. 2017 Jul 14;3(7):e1603042. doi: 10.1126/sciadv.1603042. eCollection 2017, Jul. PMID:28740863
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1250 Kb) [Save to disk]
  • Biological Unit Coordinates (5x1f.pdb1.gz) 620 Kb
  • Biological Unit Coordinates (5x1f.pdb2.gz) 617 Kb
  • LPC: Ligand-Protein Contacts for 5X1F
  • CSU: Contacts of Structural Units for 5X1F
  • Structure Factors (7363 Kb)
  • Retrieve 5X1F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X1F from S2C, [Save to disk]
    • View 5X1F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x1f_A] [5x1f_B] [5x1f_C] [5x1f_D] [5x1f_E] [5x1f_F] [5x1f_G] [5x1f_H] [5x1f_I] [5x1f_J] [5x1f_K] [5x1f_L] [5x1f_M] [5x1f_N] [5x1f_O] [5x1f_P] [5x1f_Q] [5x1f_R] [5x1f_S] [5x1f_T] [5x1f_U] [5x1f_V] [5x1f_W] [5x1f_X] [5x1f_Y] [5x1f_Z]
  • SWISS-PROT database:

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