5X3Z Rna Binding Protein Rna date Feb 09, 2017
title Solution Structure Of Musashi1 Rbd2 In Complex With Rna
authors R.Iwaoka, T.Nagata, K.Tsuda, T.Imai, H.Okano, N.Kobayashi, M.Katah
compound source
Molecule: Rna-Binding Protein Musashi Homolog 1
Chain: A
Fragment: Unp Residues 109-200
Synonym: Musashi-1
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Msi1, Msi1h
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_plasmid: Pet15b

Molecule: Rna (5'-R(Gpupapgpu)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA., Iwaoka R, Nagata T, Tsuda K, Imai T, Okano H, Kobayashi N, Katahira M, Molecules. 2017 Jul 19;22(7). pii: molecules22071207. doi:, 10.3390/molecules22071207. PMID:28753936
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (564 Kb) [Save to disk]
  • Biological Unit Coordinates (5x3z.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 5X3Z
  • Original NMR restraints for 5X3Z from PDB
  • Retrieve 5X3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X3Z from S2C, [Save to disk]
    • View 5X3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5X3Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x3z_B] [5x3z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5X3Z
  • Community annotation for 5X3Z at PDBWiki (http://pdbwiki.org)

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