5X57 Signaling Protein date Feb 15, 2017
title Structure Of Gar Domain Of Acf7
authors F.Yang, T.Wang, Y.Zhang, X.Y.Wu
compound source
Molecule: Microtubule-Actin Cross-Linking Factor 1, Isoform
Chain: A
Fragment: Unp Residues 7113-7193
Synonym: Spectraplakin Protein, 620 Kda Actin-Binding Prote Actin Cross-Linking Family Protein 7,Macrophin-1,Trabeculin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Macf1, Abp620, Acf7, Kiaa0465, Kiaa1251
Expression_system: Bacterial Endosymbiont Of Idas Sp.
Expression_system_taxid: 404293
symmetry Space Group: P 21 21 2
R_factor 0.126 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.040 45.990 25.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceACF7 regulates inflammatory colitis and intestinal wound response by orchestrating tight junction dynamics., Ma Y, Yue J, Zhang Y, Shi C, Odenwald M, Liang WG, Wei Q, Goel A, Gou X, Zhang J, Chen SY, Tang WJ, Turner JR, Yang F, Liang H, Qin H, Wu X, Nat Commun. 2017 May 25;8:15375. doi: 10.1038/ncomms15375. PMID:28541346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (5x57.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 5X57
  • Structure Factors (439 Kb)
  • Retrieve 5X57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X57 from S2C, [Save to disk]
  • Re-refined 5x57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5X57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X57
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5x57 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x57_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X57
  • Community annotation for 5X57 at PDBWiki (http://pdbwiki.org)

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