5X5L Dna Binding Protein Dna date Feb 16, 2017
title Crystal Structure Of Response Regulator Ader Dna Binding Dom Complex With An Intercistronic Region
authors Y.Wen
compound source
Molecule: Ader
Chain: A, B, E, H, M, N
Fragment: Dna-Binding (Unp 139-247)
Engineered: Yes
Organism_scientific: Acinetobacter Baumannii
Organism_taxid: 470
Gene: Ader
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Ptpapapapgptpgptpgpgpapgptpapapgptpgpt Gpa)-3');
Chain: C, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Ptpcptpcpcpapcpapcptptpapcptpcpcpapcpa Tpa)-3');
Chain: D, G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor 0.278 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.510 71.380 78.360 101.96 104.53 101.86
method X-Ray Diffractionresolution 2.75 Å
Gene
Ontology
ChainFunctionProcessComponent
H, A, M, N, E, B


Primary referenceMechanistic insight into how multidrug resistant Acinetobacter baumannii response regulator AdeR recognizes an intercistronic region., Wen Y, Ouyang Z, Yu Y, Zhou X, Pei Y, Devreese B, Higgins PG, Zheng F, Nucleic Acids Res. 2017 Sep 19;45(16):9773-9787. doi: 10.1093/nar/gkx624. PMID:28934482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]
  • Biological Unit Coordinates (5x5l.pdb1.gz) 271 Kb
  • CSU: Contacts of Structural Units for 5X5L
  • Structure Factors (781 Kb)
  • Retrieve 5X5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X5L from S2C, [Save to disk]
  • View 5X5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X5L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x5l_C] [5x5l_G] [5x5l_F] [5x5l_B] [5x5l_A] [5x5l_D] [5x5l_E] [5x5l_N] [5x5l_H] [5x5l_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X5L
  • Community annotation for 5X5L at PDBWiki (http://pdbwiki.org)

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