5X5O Transferase date Feb 17, 2017
title Crystal Structure Of Zak In Complex With Compound D2829
authors Y.B.Dai, P.Zhao, C.H.Yun
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase Ml
Chain: A
Fragment: Zak Kinase Domain (Unp Residues 5-309)
Synonym: Human Cervical Cancer Suppressor Gene 4 Protein,Hc Leucine Zipper- And Sterile Alpha Motif-Containing Kinase,M Mitogen-Activated Protein Triple Kinase,Mixed Lineage Kinas Kinase,Mrk,Sterile Alpha Motif- And Leucine Zipper-Containi Azk;
Ec: 2.7.11.25
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zak, Mltk, Hccs4
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.057 48.501 42.625 90.00 105.48 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand 7Z0 enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure Based Design of N-(3-((1H-Pyrazolo[3,4-b]pyridin-5-yl)ethynyl)benzenesulfonamides as Selective Leucine-Zipper and Sterile-alpha Motif Kinase (ZAK) Inhibitors., Chang Y, Lu X, Shibu MA, Dai YB, Luo J, Zhang Y, Li Y, Zhao P, Zhang Z, Xu Y, Tu ZC, Zhang QW, Yun CH, Huang CY, Ding K, J Med Chem. 2017 Jul 13;60(13):5927-5932. doi: 10.1021/acs.jmedchem.7b00572. Epub, 2017 Jun 16. PMID:28586211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5x5o.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5X5O
  • CSU: Contacts of Structural Units for 5X5O
  • Structure Factors (211 Kb)
  • Retrieve 5X5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X5O from S2C, [Save to disk]
  • View 5X5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X5O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x5o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X5O
  • Community annotation for 5X5O at PDBWiki (http://pdbwiki.org)

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