5X69 Transferase date Feb 21, 2017
title Human Thymidylate Synthase With A Fragment Bound In The Dime Interface
authors D.Chen, A.Jansson, A.Larsson, P.Nordlund
compound source
Molecule: Thymidylate Synthase
Chain: A, B, C, D, E, F
Fragment: Unp Residues 26-313
Synonym: Tsase
Ec: 2.1.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tyms, Ts, Oksw-Cl.29
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.209 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.353 109.353 315.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand 7ZC, UMP enzyme Transferase E.C.2.1.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B
  • thymidylate synthase activit...


  • Primary referenceStructural analyses of human thymidylate synthase reveal a site that may control conformational switching between active and inactive states., Chen D, Jansson A, Sim D, Larsson A, Nordlund P, J Biol Chem. 2017 Aug 11;292(32):13449-13458. doi: 10.1074/jbc.M117.787267. Epub , 2017 Jun 20. PMID:28634233
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (5x69.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (5x69.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (5x69.pdb3.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 5X69
  • CSU: Contacts of Structural Units for 5X69
  • Structure Factors (1800 Kb)
  • Retrieve 5X69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X69 from S2C, [Save to disk]
  • Re-refined 5x69 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5X69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X69
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x69_A] [5x69_E] [5x69_B] [5x69_F] [5x69_C] [5x69_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X69
  • Community annotation for 5X69 at PDBWiki (http://pdbwiki.org)

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