5X8R Ribosome date Mar 03, 2017
title Structure Of The 30s Small Subunit Of Chloroplast Ribosome F Spinach
authors T.Ahmed, J.Shi, S.Bhushan
compound source
Molecule: 30s Ribosomal Protein S2, Chloroplastic
Chain: b
 Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S3, Chloroplastic
Chain: c
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S5, Chloroplastic
Chain: e
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S6 Alpha, Chloroplastic
Chain: f
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S7, Chloroplastic
Chain: g
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S8, Chloroplastic
Chain: h
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S9, Chloroplastic
Chain: I
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein S10
Chain: j
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S11, Chloroplastic
Chain: k
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S12, Chloroplastic
Chain: l
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S13, Chloroplastic
Chain: m
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S15, Chloroplastic
Chain: o
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S16, Chloroplastic
Chain: p
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein S17
Chain: q
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S18, Chloroplastic
Chain: r
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S19 Alpha, Chloroplastic
Chain: s
Synonym: Cs-S23
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein S20
Chain: t
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein S21
Chain: u
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein Plastid Py
Chain: y
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 16s Rrna
Chain: a
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein Cs23
Chain: w
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S4, Chloroplastic
Chain: d
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein Cs22
Chain: v
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S14, Chloroplastic
Chain: n
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Protein Bthxc
Chain: x
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: 30s Ribosomal Protein S1, Chloroplastic
Chain: 8
Synonym: Cs1
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
Gene
Ontology
ChainFunctionProcessComponent
8


b


c


d


e


f


g


h


i


j


k


l


m


n


o


p


q


r


s


t


u


v


w


x


y


Primary referenceUnique localization of the plastid-specific ribosomal proteins in the chloroplast ribosome small subunit provides mechanistic insights into the chloroplastic translation., Ahmed T, Shi J, Bhushan S, Nucleic Acids Res. 2017 Aug 21;45(14):8581-8595. doi: 10.1093/nar/gkx499. PMID:28582576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (965 Kb) [Save to disk]
  • Biological Unit Coordinates (5x8r.pdb1.gz) 954 Kb
  • CSU: Contacts of Structural Units for 5X8R
  • Retrieve 5X8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X8R from S2C, [Save to disk]
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    • Visual 3D analysis of 5X8R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x8r_t] [5x8r_u] [5x8r_r] [5x8r_f] [5x8r_a] [5x8r_8] [5x8r_i] [5x8r_m] [5x8r_s] [5x8r_k] [5x8r_l] [5x8r_n] [5x8r_h] [5x8r_v] [5x8r_q] [5x8r_c] [5x8r_p] [5x8r_y] [5x8r_x] [5x8r_g] [5x8r_w] [5x8r_j] [5x8r_d] [5x8r_o] [5x8r_b] [5x8r_e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5X8R
  • Community annotation for 5X8R at PDBWiki (http://pdbwiki.org)

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