5X93 Signaling Protein date Mar 05, 2017
title Human Endothelin Receptor Type-B In Complex With Antagonist
authors W.Shihoya, T.Nishizawa, K.Yamashita, K.Hirata, A.Okuta, K.Tani, Y.Fujiyoshi, T.Doi, O.Nureki
compound source
Molecule: Endothelin B Receptor,Endolysin,Endothelin B Rece
Chain: A
Synonym: Et-Br,Endothelin Receptor Non-Selective Type,Lysis Lysozyme,Muramidase;
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Other_details: Chimera Protein Of Residues 66-303 From P245 Linker, Residues 61-161 From P00720, Residues 311-407 From
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Ednrb, Etrb
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Modified Pfastbac
symmetry Space Group: C 2 2 21
R_factor 0.211 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.130 147.480 108.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CLR, K87, OLC, SO4 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structures of endothelin ETB receptor bound to clinical antagonist bosentan and its analog., Shihoya W, Nishizawa T, Yamashita K, Inoue A, Hirata K, Kadji FMN, Okuta A, Tani K, Aoki J, Fujiyoshi Y, Doi T, Nureki O, Nat Struct Mol Biol. 2017 Sep;24(9):758-764. doi: 10.1038/nsmb.3450. Epub 2017, Aug 14. PMID:28805809
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5x93.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 5X93
  • CSU: Contacts of Structural Units for 5X93
  • Structure Factors (269 Kb)
  • Retrieve 5X93 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X93 from S2C, [Save to disk]
  • View 5X93 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X93
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x93_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X93
  • Community annotation for 5X93 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science