5XAU Cell Adhesion date Mar 15, 2017
title Crystal Structure Of Integrin Binding Fragment Of Laminin-51
authors M.Takizawa, T.Arimori, Y.Kitago, J.Takagi, K.Sekiguchi
compound source
Molecule: Laminin Subunit Alpha-5
Chain: A, D
Fragment: Unp Residues 2655-3327
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lama5, Kiaa0533, Kiaa1907
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Laminin Subunit Beta-1
Chain: B, E
Fragment: Unp Residues 1714-1786
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamb1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Laminin Subunit Gamma-1
Chain: C, F
Fragment: Unp Residues 1528-1609
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lamc1, Lamb2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.031 121.618 107.554 90.00 127.57 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceMechanistic basis for the recognition of laminin-511 by alpha6beta1 integrin., Takizawa M, Arimori T, Taniguchi Y, Kitago Y, Yamashita E, Takagi J, Sekiguchi K, Sci Adv. 2017 Sep 1;3(9):e1701497. doi: 10.1126/sciadv.1701497. eCollection 2017 , Sep. PMID:28879238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]
  • Biological Unit Coordinates (5xau.pdb1.gz) 243 Kb
  • Biological Unit Coordinates (5xau.pdb2.gz) 238 Kb
  • CSU: Contacts of Structural Units for 5XAU
  • Structure Factors (4659 Kb)
  • Retrieve 5XAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XAU from S2C, [Save to disk]
  • View 5XAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XAU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xau from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xau_F] [5xau_E] [5xau_B] [5xau_A] [5xau_C] [5xau_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XAU
  • Community annotation for 5XAU at PDBWiki (http://pdbwiki.org)

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