5XBK Protein Transport date Mar 20, 2017
title Crystal Structure Of Human Importin4
authors J.J.Song, J.Yoon
compound source
Molecule: Importin-4
Chain: D, A, B, C
Fragment: Unp Residues 668-1081
Synonym: Imp4,Importin-4b,Imp4b,Ran-Binding Protein 4,Ranbp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ipo4, Imp4b, Ranbp4
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Histone H3
Chain: E
Engineered: Yes

Organism_scientific: Xenopus Laevis
Organism_taxid: 8355
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1 21 1
R_factor 0.218 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.021 108.536 124.860 90.00 103.41 90.00
method X-Ray Diffractionresolution 3.22 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


E


Primary referenceIntegrative structural investigation on the architecture of human Importin4_histone H3/H4_Asf1a complex and its histone H3 tail binding., Yoon J, Kim SJ, An S, Cho S, Leitner A, Jung T, Aebersold R, Hebert H, Cho US, Song JJ, J Mol Biol. 2018 Jan 30. pii: S0022-2836(18)30041-X. doi:, 10.1016/j.jmb.2018.01.015. PMID:29408485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (454 Kb) [Save to disk]
  • Biological Unit Coordinates (5xbk.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (5xbk.pdb2.gz) 114 Kb
  • Biological Unit Coordinates (5xbk.pdb3.gz) 116 Kb
  • Biological Unit Coordinates (5xbk.pdb4.gz) 114 Kb
  • CSU: Contacts of Structural Units for 5XBK
  • Structure Factors (714 Kb)
  • Retrieve 5XBK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XBK from S2C, [Save to disk]
  • View 5XBK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XBK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xbk_A] [5xbk_D] [5xbk_E] [5xbk_B] [5xbk_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XBK
  • Community annotation for 5XBK at PDBWiki (http://pdbwiki.org)

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