5XBY Signaling Protein, Protein Binding date Mar 21, 2017
title Crystal Structure Of The Pka-Protein A Fusion Protein (End-T Fusion)
authors S.J.Youn, N.Y.Kwon, J.H.Lee, J.H.Kim, H.Lee, J.O.Lee
compound source
Molecule: Camp-Dependent Protein Kinase Type II-Alpha Regul Subunit,Immunoglobulin G-Binding Protein A;
Chain: A, B, C, D
Fragment: Unp Residues 5-44,Unp Residues 217-269
Synonym: Igg-Binding Protein A,Staphylococcal Protein A
Engineered: Yes
Mutation: Yes
Other_details: The Fusion Protein Of 4 Tags, Pka (Unp Resid And Protein A (Unp Residues 217-269)
Organism_scientific: Homo Sapiens, Staphylococcus Aureus
Organism_common: Human
Organism_taxid: 9606, 1280
Gene: Prkar2a, Pkr2, Prkar2, Spa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.251 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.988 174.147 103.611 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.25 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (5xby.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (5xby.pdb2.gz) 64 Kb
  • CSU: Contacts of Structural Units for 5XBY
  • Structure Factors (314 Kb)
  • Retrieve 5XBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XBY from S2C, [Save to disk]
  • Re-refined 5xby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XBY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xby_C] [5xby_D] [5xby_A] [5xby_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XBY
  • Community annotation for 5XBY at PDBWiki (http://pdbwiki.org)

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