5XCV	Immune System	date	Mar 23, 2017
title	Crystal Structure Of Nz-1 Fv-Clasp Fragment With Its Antigen
authors	T.Arimori, J.Takagi
compound		source
Molecule: Vh(S112c)-Sarah Chimera,Vh(S112c)-Sarah Chimera Chain: A, D Engineered: Yes		Organism_scientific: Rattus, Homo Sapiens Organism_common: Human Organism_taxid: 10114, 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Vl-Sarah(S37c) Chimera,Vl-Sarah(S37c) Chimera Chain: B, E Engineered: Yes		Organism_scientific: Rattus, Homo Sapiens Organism_common: Human Organism_taxid: 10114, 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Pa14 Peptide Chain: C, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.228 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 145.617 50.122 121.868 90.00 110.46 90.00
method	X-Ray Diffraction	resolution	2.14 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A, D, E, B
Primary reference	Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability., Arimori T, Kitago Y, Umitsu M, Fujii Y, Asaki R, Tamura-Kawakami K, Takagi J, Structure. 2017 Sep 6. pii: S0969-2126(17)30264-2. doi:, 10.1016/j.str.2017.08.011. PMID:28919443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk] Biological Unit Coordinates (5xcv.pdb1.gz) 111 Kb Biological Unit Coordinates (5xcv.pdb2.gz) 114 Kb LPC: Ligand-Protein Contacts for 5XCV CSU: Contacts of Structural Units for 5XCV Structure Factors (1244 Kb) Retrieve 5XCV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XCV from S2C, [Save to disk]

View 5XCV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XCV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xcv_E] [5xcv_D] [5xcv_B] [5xcv_C] [5xcv_F] [5xcv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XCV

Community annotation for 5XCV at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---