5XDQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CU, CUA, DMU, EDO, FME, HEA, MG, NA, PEK, PER, PGV, PSC, SAC, TGL, TPO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, N


B, O
  • cytochrome-c oxidase activit...


    • C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • F, S


    I, V
  • cytochrome-c oxidase activit...


    • J, W


    M, Z


    Q, D


    R, E


    T, G


    U, H


    X, K


    Y, L


    Primary referenceStructure of bovine cytochrome c oxidase crystallized at a neutral pH using a fluorinated detergent., Luo F, Shinzawa-Itoh K, Hagimoto K, Shimada A, Shimada S, Yamashita E, Yoshikawa S, Tsukihara T, Acta Crystallogr F Struct Biol Commun. 2017 Jul 1;73(Pt 7):416-422. doi:, 10.1107/S2053230X17008834. Epub 2017 Jun 20. PMID:28695851
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1359 Kb) [Save to disk]
  • Biological Unit Coordinates (5xdq.pdb1.gz) 676 Kb
  • Biological Unit Coordinates (5xdq.pdb2.gz) 672 Kb
  • LPC: Ligand-Protein Contacts for 5XDQ
  • CSU: Contacts of Structural Units for 5XDQ
  • Structure Factors (9364 Kb)
  • Retrieve 5XDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XDQ from S2C, [Save to disk]
  • Re-refined 5xdq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5XDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xdq_A] [5xdq_B] [5xdq_C] [5xdq_D] [5xdq_E] [5xdq_F] [5xdq_G] [5xdq_H] [5xdq_I] [5xdq_J] [5xdq_K] [5xdq_L] [5xdq_M] [5xdq_N] [5xdq_O] [5xdq_P] [5xdq_Q] [5xdq_R] [5xdq_S] [5xdq_T] [5xdq_U] [5xdq_V] [5xdq_W] [5xdq_X] [5xdq_Y] [5xdq_Z]
  • SWISS-PROT database:

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