5XDX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDL, CHD, CU, CUA, DMU, EDO, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, U


J, W


K, X


L, Y


N, A


O, B
  • cytochrome-c oxidase activit...


    • P, C
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • Q, D


    R, E


    S, F


    T, G


    V, I
  • cytochrome-c oxidase activit...


    • Z, M


    Primary referenceStructure of bovine cytochrome c oxidase in the ligand-free reduced state at neutral pH., Luo F, Shinzawa-Itoh K, Hagimoto K, Shimada A, Shimada S, Yamashita E, Yoshikawa S, Tsukihara T, Acta Crystallogr F Struct Biol Commun. 2018 Feb 1;74(Pt 2):92-98. doi:, 10.1107/S2053230X17018532. Epub 2018 Jan 26. PMID:29400318
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1323 Kb) [Save to disk]
  • Biological Unit Coordinates (5xdx.pdb1.gz) 653 Kb
  • Biological Unit Coordinates (5xdx.pdb2.gz) 657 Kb
  • LPC: Ligand-Protein Contacts for 5XDX
  • CSU: Contacts of Structural Units for 5XDX
  • Structure Factors (8117 Kb)
  • Retrieve 5XDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XDX from S2C, [Save to disk]
    • View 5XDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xdx_N] [5xdx_A] [5xdx_B] [5xdx_C] [5xdx_D] [5xdx_E] [5xdx_F] [5xdx_G] [5xdx_K] [5xdx_H] [5xdx_L] [5xdx_I] [5xdx_M] [5xdx_J] [5xdx_O] [5xdx_P] [5xdx_Q] [5xdx_R] [5xdx_S] [5xdx_T] [5xdx_U] [5xdx_V] [5xdx_W] [5xdx_X] [5xdx_Y] [5xdx_Z]
  • SWISS-PROT database:

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