5XFR	Transcription Dna	date	Apr 11, 2017
title	Ternary Complex Of Mtf2, Dna And Histone
authors	Z.Wang, H.Li
compound		source
Molecule: Metal-Response Element-Binding Transcription Fact Chain: A, B Fragment: Unp Residues 43-358 Synonym: Metal Regulatory Transcription Factor 2,Metal-Resp Element Dna-Binding Protein M96,Polycomb-Like Protein 2,Hpc Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mtf2, Pcl2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Peptide From Histone H3.1 Chain: C, D Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Dna (5'-D(Gpgpgpcpgpgpcpcpgpcpcpcpt) Chain: E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 31 2 1	R_factor 0.203 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.743 137.743 101.226 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	M3L, ZN	enzyme
Primary reference	Polycomb-like proteins link the PRC2 complex to CpG islands., Li H, Liefke R, Jiang J, Kurland JV, Tian W, Deng P, Zhang W, He Q, Patel DJ, Bulyk ML, Shi Y, Wang Z, Nature. 2017 Sep 14;549(7671):287-291. doi: 10.1038/nature23881. Epub 2017 Sep 6. PMID:28869966

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (5xfr.pdb1.gz) 117 Kb LPC: Ligand-Protein Contacts for 5XFR CSU: Contacts of Structural Units for 5XFR Structure Factors (708 Kb) Retrieve 5XFR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5XFR from S2C, [Save to disk]

View 5XFR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5XFR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5xfr_D] [5xfr_F] [5xfr_C] [5xfr_A] [5xfr_B] [5xfr_E] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5XFR

Community annotation for 5XFR at PDBWiki (http://pdbwiki.org)

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